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2480 | class OSW(BaseModel):
"""Bundles core functionalities of OpenSemanticWorld (OSW)"""
uuid: str = "2ea5b605-c91f-4e5a-9559-3dff79fdd4a5"
_protected_keywords = (
"_osl_template",
"_osl_footer",
) # private properties included in model export
class Config:
arbitrary_types_allowed = True # necessary to allow e.g. np.array as type
site: WtSite
def __init__(self, **data: Any):
super().__init__(**data)
# implement resolver backend with osw.load_entity
class OswDefaultBackend(Backend):
# oold.backend.interface is pydantic v2, so we cannot use
# our v1 OSW model as attribute directly
osw_obj: Any
# stub satisfying the oold Backend interface; resolve() does the work
def resolve_iris(self, iris: List[str]) -> dict[str, dict]: # ty: ignore[empty-body]
pass
def resolve(self, request: ResolveParam):
# print("RESOLVE", request)
osw_obj: OSW = self.osw_obj
entities = osw_obj.load_entity(
OSW.LoadEntityParam(titles=request.iris)
).entities
# create a dict with request.iris as keys and the loaded entities as values
# by iterating over both lists
nodes = {}
for iri, entity in zip(request.iris, entities):
nodes[iri] = entity
return ResolveResult(nodes=nodes)
def store_jsonld_dicts(self, jsonld_dicts):
pass
def store(self, request: StoreParam):
osw_obj: OSW = self.osw_obj
osw_obj.store_entity(
OSW.StoreEntityParam(
entities=list(request.nodes.values()), overwrite=True
),
)
return StoreResult(success=True)
def query():
pass
r = OswDefaultBackend(osw_obj=self)
set_resolver(SetResolverParam(iri="Item", resolver=r))
set_resolver(SetResolverParam(iri="Category", resolver=r))
set_resolver(SetResolverParam(iri="Property", resolver=r))
set_resolver(SetResolverParam(iri="File", resolver=r))
set_backend(SetBackendParam(iri="Item", backend=r))
set_backend(SetBackendParam(iri="Category", backend=r))
set_backend(SetBackendParam(iri="Property", backend=r))
set_backend(SetBackendParam(iri="File", backend=r))
@property
def mw_site(self) -> Site:
"""Returns the mwclient Site object of the OSW instance."""
return self.site.mw_site
def close_connection(self):
"""Close the connection to the OSL instance."""
self.mw_site.connection.close()
@staticmethod
def get_osw_id(uuid: Union[str, UUID]) -> str:
"""Generates a OSW-ID based on the given uuid by prefixing "OSW" and removing
all '-' from the uuid-string
Parameters
----------
uuid
uuid object, e.g. UUID("2ea5b605-c91f-4e5a-9559-3dff79fdd4a5")
Returns
-------
OSW-ID string, e.g. OSW2ea5b605c91f4e5a95593dff79fdd4a5
"""
return "OSW" + str(uuid).replace("-", "")
@staticmethod
def get_uuid(osw_id: str) -> UUID:
"""Returns the uuid for a given OSW-ID. Kept for backwards compatibility,
the implementation lives in osw.utils.wiki.get_uuid()
Parameters
----------
osw_id
OSW-ID string, e.g. OSW2ea5b605c91f4e5a95593dff79fdd4a5, with or
without file suffixes, e.g.
OSW2ea5b605c91f4e5a95593dff79fdd4a5.drawio.png
Returns
-------
uuid object, e.g. UUID("2ea5b605-c91f-4e5a-9559-3dff79fdd4a5")
"""
return get_uuid_from_osw_id(osw_id)
class SortEntitiesResult(OswBaseModel):
by_name: Dict[str, List[OswBaseModel]]
by_type: Dict[str, List[OswBaseModel]]
@staticmethod
def sort_list_of_entities_by_class(
entities: List[OswBaseModel],
exclude_typeless: bool = True,
raise_error: bool = False,
) -> SortEntitiesResult:
"""Sorts a list of entities by class name and type.
Parameters
----------
entities:
List of entities to be sorted
exclude_typeless:
Exclude entities, which are instances of a class that does not
define a field 'type'
raise_error:
Raise an error if an entity can not be processed because it is an
instance of class that does not define a field 'type'
"""
by_name = {}
by_type = {}
for entity in entities:
# Get class name
name = entity.__class__.__name__
# See if the class has a type field
if "type" not in entity.__class__.__fields__:
if raise_error:
raise AttributeError(
f"Instance '{entity}' of class '{name}' can not be processed "
f"as the class does not define a field 'type'."
)
if exclude_typeless:
_logger.warning(
f"Skipping instance '{entity}' of class '{name}' as the class "
f"does not define a field 'type'."
)
# Excludes the respective entity from the list which will be
# processed further:
continue
model_type = None
else:
# Get class type if available
model_type = entity.__class__.__fields__["type"].get_default()[0]
# Add entity to by_name
if name not in by_name:
by_name[name] = []
by_name[name].append(entity)
# Add entity to by_type
if model_type not in by_type:
by_type[model_type] = []
by_type[model_type].append(entity)
return OSW.SortEntitiesResult(by_name=by_name, by_type=by_type)
class SchemaRegistration(BaseModel):
"""dataclass param of register_schema()"""
class Config:
arbitrary_types_allowed = True # allow any class as type
model_cls: Type[OswBaseModel]
"""The model class"""
schema_uuid: str # Optional[str] = model_cls.__uuid__
"""The schema uuid"""
schema_name: str # Optional[str] = model_cls.__name__
"""The schema name"""
schema_bases: List[str] = Field(default=["Category:Item"])
"""A list of base schemas (referenced by allOf)"""
def register_schema(self, schema_registration: SchemaRegistration):
"""Registers a new or updated schema in OSW by creating the corresponding
category page.
Parameters
----------
schema_registration
see SchemaRegistration
"""
entity = schema_registration.model_cls
jsondata = {}
jsondata["uuid"] = schema_registration.schema_uuid
jsondata["label"] = {"text": schema_registration.schema_name, "lang": "en"}
jsondata["subclass_of"] = schema_registration.schema_bases
if issubclass(entity, BaseModel):
entity_title = "Category:" + OSW.get_osw_id(schema_registration.schema_uuid)
page = WtPage(wtSite=self.site, title=entity_title)
if page.exists:
page = self.site.get_page(
WtSite.GetPageParam(titles=[entity_title])
).pages[0]
page.set_slot_content("jsondata", jsondata)
schema = json.loads(
entity.schema_json(indent=4).replace("$ref", "dollarref")
)
jsonpath_expr = parse("$..allOf")
# Replace local definitions (#/definitions/...) with embedded definitions
# to prevent resolve errors in json-editor
for match in jsonpath_expr.find(schema):
result_array = []
for subschema in match.value:
# pprint(subschema)
value = subschema["dollarref"]
if value.startswith("#"):
definition_jsonpath_expr = parse(
value.replace("#", "$").replace("/", ".")
)
for def_match in definition_jsonpath_expr.find(schema):
# pprint(def_match.value)
result_array.append(def_match.value)
else:
result_array.append(subschema)
match.full_path.update_or_create(schema, result_array)
if "definitions" in schema:
del schema["definitions"]
if "allOf" not in schema:
schema["allOf"] = []
for base in schema_registration.schema_bases:
schema["allOf"].append({
"$ref": f"/wiki/{base}?action=raw&slot=jsonschema"
})
page.set_slot_content("jsonschema", schema)
else:
_logger.error("Unsupported entity type")
return
page.edit()
_logger.info("Entity stored at " + page.get_url())
class SchemaUnregistration(BaseModel):
"""dataclass param of register_schema()"""
class Config:
arbitrary_types_allowed = True # allow any class as type
model_cls: Optional[Type[OswBaseModel]]
"""The model class"""
model_uuid: Optional[str]
"""The model uuid"""
comment: Optional[str]
"""The comment for the deletion, to be left behind"""
def unregister_schema(self, schema_unregistration: SchemaUnregistration):
"""deletes the corresponding category page
Parameters
----------
schema_unregistration
see SchemaUnregistration
"""
uuid = ""
if schema_unregistration.model_uuid:
uuid = schema_unregistration.model_uuid
elif (
not uuid
and schema_unregistration.model_cls
and issubclass(schema_unregistration.model_cls, BaseModel)
):
uuid = schema_unregistration.model_cls.__uuid__
else:
_logger.error("Neither model nor model id provided")
entity_title = "Category:" + OSW.get_osw_id(uuid)
page = self.site.get_page(WtSite.GetPageParam(titles=[entity_title])).pages[0]
page.delete(schema_unregistration.comment)
class FetchSchemaMode(Enum):
"""Modes of the FetchSchemaParam class
Attributes
----------
append:
append to the current model
replace:
replace the current model
"""
append = "append" # append to the current model
replace = "replace" # replace the current model
class FetchSchemaParam(BaseModel):
"""Param for fetch_schema()
Attributes
----------
schema_title:
one or multiple titles (wiki page name) of schemas (default: Category:Item)
mode:
append or replace (default) current schema, see FetchSchemaMode
"""
schema_title: Optional[Union[List[str], str]] = "Category:Item"
mode: Optional[str] = (
"replace"
# type 'FetchSchemaMode' requires: 'from __future__ import annotations'
)
generate_annotations: Optional[bool] = True
"""generate custom schema keywords in Fields and Classes.
Required to update the schema in OSW without information loss"""
generator_options: Optional[Dict[str, Any]] = None
"""custom options for the datamodel-code-generator"""
offline_pages: Optional[Dict[str, WtPage]] = None
"""pages to be used offline instead of fetching them from the OSW instance"""
result_model_path: Optional[Union[str, pathlib.Path]] = None
"""path to the generated model file, if None,
the default path ./model/entity.py is used"""
class Config:
arbitrary_types_allowed = True
class FetchSchemaResult(BaseModel):
fetched_schema_titles: Optional[List[str]] = None
"""List of titles of the schemas that were fetched.
This includes the requested schemas and their dependencies."""
error_messages: Optional[List[str]] = None
"""List of critical errors that did interrupt the fetch process"""
warning_messages: Optional[List[str]] = None
"""List of warnings that did not interrupt the fetch process"""
def fetch_schema(
self, fetchSchemaParam: FetchSchemaParam = None
) -> FetchSchemaResult:
"""Loads the given schemas from the OSW instance and auto-generates python
datasclasses within osw.model.entity from it
Parameters
----------
fetchSchemaParam
See FetchSchemaParam, by default None
"""
if not isinstance(fetchSchemaParam.schema_title, list):
fetchSchemaParam.schema_title = [fetchSchemaParam.schema_title]
first = True
last = False
results = []
for schema_title in fetchSchemaParam.schema_title:
last = schema_title == fetchSchemaParam.schema_title[-1]
mode = fetchSchemaParam.mode
if not first: # 'replace' makes only sense for the first schema
mode = "append"
res = self._fetch_schema(
OSW._FetchSchemaParam(
schema_title=schema_title,
mode=mode,
final=last,
generate_annotations=fetchSchemaParam.generate_annotations,
generator_options=fetchSchemaParam.generator_options,
offline_pages=fetchSchemaParam.offline_pages,
result_model_path=fetchSchemaParam.result_model_path,
)
)
results.append(res)
first = False
# merge unique results and return
merged_result = OSW.FetchSchemaResult(
fetched_schema_titles=[], error_messages=[], warning_messages=[]
)
for result in results:
if result.fetched_schema_titles:
merged_result.fetched_schema_titles.extend(result.fetched_schema_titles)
if result.error_messages:
merged_result.error_messages.extend(result.error_messages)
if result.warning_messages:
merged_result.warning_messages.extend(result.warning_messages)
return OSW.FetchSchemaResult(
fetched_schema_titles=(
list(set(merged_result.fetched_schema_titles))
if len(merged_result.fetched_schema_titles) > 0
else None
),
error_messages=(
list(set(merged_result.error_messages))
if len(merged_result.error_messages) > 0
else None
),
warning_messages=(
list(set(merged_result.warning_messages))
if len(merged_result.warning_messages) > 0
else None
),
)
class _FetchSchemaParam(BaseModel):
"""Internal param for _fetch_schema()
Attributes
----------
schema_title:
the title (wiki page name) of the schema (default: Category:Item)
root:
marks the root iteration for a recursive fetch (internal param,
default: True)
mode:
append or replace (default) current schema, see FetchSchemaMode
"""
schema_title: Optional[str] = "Category:Item"
root: Optional[bool] = True
"""marks the root iteration for a recursive fetch (internal param, default: True)"""
final: Optional[bool] = True
"""if multiple schemas are fetched this marks the final run to cleanup the code"""
mode: Optional[str] = (
"replace"
# type 'FetchSchemaMode' requires: 'from __future__ import annotations'
)
generate_annotations: Optional[bool] = False
"""generate custom schema keywords in Fields and Classes.
Required to update the schema in OSW without information loss"""
generator_options: Optional[Dict[str, Any]] = None
"""custom options for the datamodel-code-generator"""
offline_pages: Optional[Dict[str, WtPage]] = None
"""pages to be used offline instead of fetching them from the OSW instance"""
result_model_path: Optional[Union[str, pathlib.Path]] = None
"""path to the generated model file, if None,
the default path ./model/entity.py is used"""
fetched_schema_titles: Optional[List[str]] = []
"""keep track of fetched schema titles to prevent recursion"""
warning_messages: Optional[List[str]] = None
class Config:
arbitrary_types_allowed = True
def _fetch_schema(
self, fetchSchemaParam: _FetchSchemaParam = None
) -> FetchSchemaResult:
"""Loads the given schema from the OSW instance and autogenerates python
datasclasses within osw.model.entity from it
Parameters
----------
fetchSchemaParam
See FetchSchemaParam, by default None
"""
site_cache_state = self.site.get_cache_enabled()
self.site.enable_cache()
if fetchSchemaParam is None:
fetchSchemaParam = OSW._FetchSchemaParam()
schema_title = fetchSchemaParam.schema_title
fetchSchemaParam.fetched_schema_titles.append(schema_title)
root = fetchSchemaParam.root
schema_name = schema_title.split(":")[-1]
if (
fetchSchemaParam.offline_pages is not None
and schema_title in fetchSchemaParam.offline_pages
):
_logger.info(f"Fetch {schema_title} from offline pages")
page = fetchSchemaParam.offline_pages[schema_title]
else:
_logger.info(f"Fetch {schema_title} from online pages")
page = self.site.get_page(WtSite.GetPageParam(titles=[schema_title])).pages[
0
]
if not page.exists:
_logger.error(f"Page {schema_title} does not exist")
# the $ref that led here was already rewritten to this file name
write_schema_stub(get_model_dir_path(), schema_name)
return OSW.FetchSchemaResult(
fetched_schema_titles=fetchSchemaParam.fetched_schema_titles,
warning_messages=fetchSchemaParam.warning_messages,
error_messages=[f"Page {schema_title} does not exist"],
)
# not only in the JsonSchema namespace the schema is located in the main slot
# in all other namespaces, the json_schema slot is used
if schema_title.startswith("JsonSchema:"):
schema_str = ""
if page.get_slot_content("main"):
schema_str = json.dumps(page.get_slot_content("main"))
else:
schema_str = ""
if page.get_slot_content("jsonschema"):
schema = merge_generated_definitions(
deepcopy(page.get_slot_content("jsonschema"))
)
schema_str = json.dumps(schema)
if (schema_str is None) or (schema_str == ""):
_logger.warning(f"Schema slot of {schema_title} is empty")
schema_str = "{}" # empty schema to make reference work
if fetchSchemaParam.warning_messages is None:
fetchSchemaParam.warning_messages = []
fetchSchemaParam.warning_messages.append(
f"Schema slot of {schema_title} is empty"
)
generator = Generator()
schemas_for_preprocessing = [json.loads(schema_str)]
generator.preprocess(
Generator.GenerateParams(json_schemas=schemas_for_preprocessing)
)
schema_str = json.dumps(schemas_for_preprocessing[0])
schema = json.loads(schema_str.replace("$ref", "dollarref"))
jsonpath_expr = parse("$..dollarref")
ref_error_messages = None
for match in jsonpath_expr.find(schema):
# value = "https://" + self.mw_site.host + match.value
if match.value.startswith("#"):
continue # skip self references
ref_schema_title = match.value.replace("/wiki/", "").split("?")[0]
ref_schema_name = ref_schema_title.split(":")[-1] + ".json"
value = ""
for _i in range(0, schema_name.count("/")):
value += "../" # created relative path to top-level schema dir
value += ref_schema_name # create a reference to a local file
# keep document-relative jsonpointer if present
if "#/" in match.value:
value += "#/" + match.value.split("#/")[-1]
match.full_path.update_or_create(schema, value)
# print(f"replace {match.value} with {value}")
if (
ref_schema_title != schema_title
and ref_schema_title not in fetchSchemaParam.fetched_schema_titles
): # prevent recursion in case of self references
_param = fetchSchemaParam.copy()
_param.root = False
_param.schema_title = ref_schema_title
ref_result = self._fetch_schema(_param) # resolve refs recursive
# the recursive call is the only place that knows why a
# referenced schema could not be fetched, so its messages have
# to be carried up rather than dropped
ref_error_messages = collect_messages(
ref_error_messages, ref_result.error_messages
)
fetchSchemaParam.warning_messages = collect_messages(
fetchSchemaParam.warning_messages, ref_result.warning_messages
)
model_dir_path = get_model_dir_path() # src/model
schema_path = os.path.join(model_dir_path, schema_name + ".json")
os.makedirs(os.path.dirname(schema_path), exist_ok=True)
with open(schema_path, "w", encoding="utf-8") as f:
schema_str = json.dumps(schema, ensure_ascii=False, indent=4).replace(
"dollarref", "$ref"
)
# print(schema_str)
f.write(schema_str)
# result_model_path = schema_path.replace(".json", ".py")
result_model_path = os.path.join(model_dir_path, "entity.py")
if fetchSchemaParam.result_model_path:
result_model_path = fetchSchemaParam.result_model_path
if not isinstance(result_model_path, str):
result_model_path = str(result_model_path)
temp_model_path = os.path.join(model_dir_path, "temp.py")
data_model_type = "pydantic.BaseModel"
if fetchSchemaParam.generator_options is not None:
data_model_type = fetchSchemaParam.generator_options.get(
"output_model_type", "pydantic.BaseModel"
)
if root:
# suppress deprecation warnings from pydantic
# see https://github.com/koxudaxi/datamodel-code-generator/issues/2213
warnings.filterwarnings("ignore", category=PydanticDeprecatedSince20)
if fetchSchemaParam.generate_annotations:
# monkey patch class
datamodel_code_generator.parser.jsonschema.JsonSchemaParser = (
OOLDJsonSchemaParser
)
datamodel_code_generator.generate(
input_=pathlib.Path(schema_path),
input_file_type="jsonschema",
output=pathlib.Path(temp_model_path),
base_class=(
"opensemantic.v1.OswBaseModel"
if data_model_type == "pydantic.BaseModel"
else "opensemantic.OswBaseModel"
),
# use_default=True,
apply_default_values_for_required_fields=True,
use_unique_items_as_set=True,
enum_field_as_literal=datamodel_code_generator.LiteralType.Off,
# will create MyEnum(str, Enum) instead of MyEnum(Enum)
use_subclass_enum=True,
set_default_enum_member=True,
use_title_as_name=True,
use_schema_description=True,
use_field_description=True,
# https://github.com/koxudaxi/datamodel-code-generator/issues/2447
# use_standard_collections=data_model_type != "pydantic.BaseModel",
encoding="utf-8",
use_double_quotes=True,
collapse_root_models=True,
reuse_model=True,
field_include_all_keys=True,
allof_class_hierarchy=datamodel_code_generator.AllOfClassHierarchy.Always,
additional_imports=(
["uuid.uuid4", "pydantic.ConfigDict"]
if data_model_type != "pydantic.BaseModel"
else ["uuid.uuid4"]
),
**(fetchSchemaParam.generator_options or {}),
)
# note: we could use OOLDJsonSchemaParser directly (see below),
# but datamodel_code_generator.generate
# does some pre- and postprocessing we do not want to duplicate
# data_model_type = datamodel_code_generator.DataModelType.PydanticBaseModel
# #data_model_type = DataModelType.PydanticV2BaseModel
# target_python_version = datamodel_code_generator.PythonVersion.PY_38
# data_model_types = datamodel_code_generator.model.get_data_model_types(
# data_model_type, target_python_version
# )
# parser = OOLDJsonSchemaParserFixedRefs(
# source=pathlib.Path(schema_path),
# base_class="opensemantic.OswBaseModel",
# data_model_type=data_model_types.data_model,
# data_model_root_type=data_model_types.root_model,
# data_model_field_type=data_model_types.field_model,
# data_type_manager_type=data_model_types.data_type_manager,
# target_python_version=target_python_version,
# #use_default=True,
# apply_default_values_for_required_fields=True,
# use_unique_items_as_set=True,
# enum_field_as_literal=datamodel_code_generator.LiteralType.All,
# use_title_as_name=True,
# use_schema_description=True,
# use_field_description=True,
# encoding="utf-8",
# use_double_quotes=True,
# collapse_root_models=True,
# reuse_model=True,
# #field_include_all_keys=True
# )
# result = parser.parse()
# with open(temp_model_path, "w", encoding="utf-8") as f:
# f.write(result)
# see https://koxudaxi.github.io/datamodel-code-generator/
# --base-class OswBaseModel: use a custom base class
# --custom-template-dir src/model/template_data/
# --extra-template-data src/model/template_data/extra.json
# --use-default: Use default value even if a field is required
# --use-unique-items-as-set: define field type as `set` when the field
# attribute has`uniqueItems`
# --enum-field-as-literal all: prevent 'value is not a valid enumeration
# member' errors after schema reloading
# --use-schema-description: Use schema description to populate class
# docstring
# --use-field-description: Use schema description to populate field
# docstring
# --use-title-as-name: use titles as class names of models, e.g. for the
# footer templates
# --collapse-root-models: Models generated with a root-type field will be
# merged
# into the models using that root-type model, e.g. for Entity.statements
# --reuse-model: Re-use models on the field when a module has the model
# with the same content
content = ""
with open(temp_model_path, encoding="utf-8") as f:
content = f.read()
os.remove(temp_model_path)
content = re.sub(
r"(UUID = Field\(...)",
r"UUID = Field(default_factory=uuid4",
content,
) # enable default value for uuid
# we are now using pydantic.v1
# pydantic imports lead to uninitialized fields (FieldInfo still present)
# only if generator_options["data_model_type"] is not set or "pydantic.BaseModel"
if data_model_type == "pydantic.BaseModel":
content = re.sub(
r"(from pydantic import)", "from pydantic.v1 import", content
)
# remove field param unique_items
# --use-unique-items-as-set still keeps unique_items=True as Field param
# which was removed, see https://github.com/pydantic/pydantic-core/issues/296
# --output-model-type pydantic_v2.BaseModel fixes that but generated models
# are not v1 compatible mainly by using update_model()
content = re.sub(r"(,?\s*unique_items=True\s*)", "", content)
# fix unserializable defaults from datamodel-code-generator (#125)
content = remove_unserializable_default_sentinels(content)
# Detect empty subclasses, replaces their occurrences with base classes,
# and removes the empty class definitions.
# Only processes subclasses that follow naming patterns:
# - BaseclassModel (e.g., DescriptionModel extends Description)
# - Baseclass<number> (e.g., Label1, Label2 extend Label)
# Pattern to match empty subclasses
# Matches: class SubClass(BaseClass):
# followed by optional whitespace/docstring and pass
pattern = "".join((
r"class\s+", # 'class' keyword
r"(\w+)", # capture subclass name
r"\s*\(\s*", # opening parenthesis
r"(\w+)", # capture base class name
r"\s*\)\s*:", # closing parenthesis and colon
r"\s*", # optional whitespace
r'(?:\n\s*(?:""".*?"""|\'\'\'.*?\'\'\')'
# optional docstring (triple quotes)
r"\s*)?", # end optional docstring
r"\n\s*pass\s*", # pass statement
r"(?:\n|$)", # newline or end of string
))
# Find all empty subclasses
matches = list(re.finditer(pattern, content, re.MULTILINE | re.DOTALL))
# Filter matches based on naming patterns
valid_matches = []
for match in matches:
subclass_name = match.group(1)
base_class_name = match.group(2)
# Check if subclass follows the naming patterns
if (
subclass_name == base_class_name + "Model" # BaseclassModel pattern
or re.match(
rf"^{re.escape(base_class_name)}\d+$", subclass_name
) # Baseclass<number> pattern
):
valid_matches.append(match)
content = content
replacements = []
# Process matches in reverse order to avoid offset issues when removing
for match in reversed(valid_matches):
subclass_name = match.group(1)
base_class_name = match.group(2)
replacements.append((subclass_name, base_class_name))
# Remove the entire class definition
start, end = match.span()
# Also remove any trailing newlines to avoid extra blank lines
while end < len(content) and content[end] == "\n":
end += 1
content = content[:start] + content[end:]
# Replace all occurrences of subclass names with base class names
for subclass_name, base_class_name in reversed(replacements):
pattern_replace = r"\b" + re.escape(subclass_name) + r"\b"
content = re.sub(pattern_replace, base_class_name, content)
if fetchSchemaParam.mode == "replace":
header = "from uuid import uuid4\n"
# if target path is default model/entity.py, we need to add imports
if fetchSchemaParam.result_model_path is None:
if data_model_type == "pydantic.BaseModel":
header += "from opensemantic.core.v1 import (\n"
else:
header += "from opensemantic.core import (\n"
header += (
" Label,\n"
" Entity,\n"
" Item,\n"
" DefinedTerm,\n"
" Keyword,\n"
" IntangibleItem,\n"
" Meta,\n"
" WikiPage,\n"
" LangCode,\n"
" Description,\n"
" ObjectStatement,\n"
" DataStatement,\n"
" QuantityStatement,\n"
" File,\n"
" LocalFile,\n"
" RemoteFile,\n"
" WikiFile,\n"
" PagePackage,\n"
") # noqa: F401, E402\n"
"\n"
)
# import Software, PrefectWorkflow from base
if data_model_type == "pydantic.BaseModel":
header += (
"from opensemantic.base.v1 import Software, PrefectFlow\n"
)
else:
header += (
"from opensemantic.base import Software, PrefectFlow\n"
)
content = re.sub(
pattern=r"(^class\s*\S*\s*\(\s*[\S\s]*?\s*\)\s*:.*\n)",
repl=header + r"\n\n\n\1",
string=content,
count=1,
flags=re.MULTILINE,
) # add header before first class declaration
if fetchSchemaParam.mode == "append":
org_content = ""
with open(result_model_path, encoding="utf-8") as f:
org_content = f.read()
pattern = re.compile(
r"^class\s*([\S]*)\s*\(\s*[\S\s]*?\s*\)\s*:.*\n", re.MULTILINE
) # match class definition [\s\S]*(?:[^\S\n]*\n){2,}
for cls in re.findall(pattern, org_content):
content = re.sub(
r"^(class\s*"
+ cls
+ r"\s*\(\s*[\S\s]*?\s*\)\s*:.*\n[\s\S]*?(?:[^\S\n]*\n){3,})",
"",
content,
count=1,
flags=re.MULTILINE,
) # replace duplicated classes
# combine original and new content
all_content = org_content + "\n\n\n" + content
content = all_content
if fetchSchemaParam.final:
# Resolve bare OSW ID type hints (e.g. OSW3886...)
# with actual class names (e.g. RiskAssessmentProcess)
# using UUID annotations from generated class definitions
content = resolve_osw_id_type_hints(content)
# Cleanup the combined content
# find all "<cls>.update_forward_refs()" lines,
# remove duplicates and put them to EOF
# do the same for "<cls>.model_rebuild()"
func_list = []
if data_model_type == "pydantic.BaseModel":
func_list.append("update_forward_refs")
if data_model_type == "pydantic_v2.BaseModel":
func_list.append("model_rebuild")
for func in func_list:
pattern_forward_ref = re.compile(r"(\w+)\." + func + r"\(\s*\)\s*")
forward_refs = pattern_forward_ref.findall(content)
if forward_refs:
# remove all occurrences
content = pattern_forward_ref.sub("", content)
# add unique occurrences to the end of the file
unique_forward_refs = list()
for cls in forward_refs:
if f"{cls}.{func}()\n" not in unique_forward_refs:
unique_forward_refs.append(f"{cls}.{func}()\n")
content += "\n" + "".join(sorted(unique_forward_refs))
# Moves all single-line import statements to the beginning of the file.
import_pattern = (
r"^(?:\s*#\s*[^\n]*\n)?"
r"(?:from\s+(\w+(?:\.\w+)*)\s+)?import\s+(?:\w+(?:\s+as\s+\w+)?(?:\s*,\s*\w+(?:\s+as\s+\w+)?)*)"
r"|^(?:\s*#\s*[^\n]*\n)?(?:from\s+(\w+(?:\.\w+)*)\s+import\s+\((?:[^\n]*\n?)*?\))\s*(?:#\s*[^\n]*)?$"
)
# iterate over the matches
# collect full import statements to move them to the top
# replace the original location with an empty string
imports = []
for match in re.finditer(import_pattern, content, re.MULTILINE):
import_stmt = match.group(0)
# # if "from __future__ import annotations" insert at index 0
# if import_stmt.strip() == "from __future__ import annotations":
# imports.insert(0, import_stmt)
# else:
imports.append(import_stmt)
# replace all occurrences with empty string
# make sure to use match line start and end since import pattern
# may overlap partially, e.g.
# from datetime import date
# from datetime import date, datetime
_logger.info(f"Replace import statement: {import_stmt}")
content = re.sub(
r"^" + re.escape(import_stmt) + r"$",
"",
content,
flags=re.MULTILINE,
)
# remove duplicate imports (done by isort later)
imports = list(set(imports))
# add imports to the beginning of the file
content = "\n".join(sorted(imports)) + "\n\n" + content
# remove contrains from ForwardRefs
content = remove_constraints_from_forward_refs(content)
# run formatting tool black on the combined content
# consolidate imports as well
try:
content = black.format_str(content, mode=black.Mode())
# run isort to sort imports using Vertical Hanging Indent style
content = isort.code(content, profile="black")
except Exception as e:
# black/isort are optional, continue without formatting, but
# do not hide a signal that the generated content is broken
_logger.warning(f"Failed to format generated model content: {e}")
# validate before writing: a corrupt write poisons every later
# import of this file, so leaving the previous valid content in
# place is strictly better than writing invalid syntax (#125)
ensure_valid_python_source(content, result_model_path)
# keep the current file so that a model that parses but does not
# import can be rolled back below (#125)
previous_content = read_file_if_exists(result_model_path)
with open(result_model_path, "w", encoding="utf-8") as f:
f.write(content)
if fetchSchemaParam.final:
# reload the updated module, restoring the previous content if
# the generated model turns out not to be importable
reload_module_or_restore(model, result_model_path, previous_content)
if not site_cache_state:
self.site.disable_cache() # restore original state
return OSW.FetchSchemaResult(
fetched_schema_titles=fetchSchemaParam.fetched_schema_titles,
warning_messages=fetchSchemaParam.warning_messages,
error_messages=ref_error_messages,
)
def install_dependencies(
self,
dependencies: Dict[str, str] = None,
mode: str = "append",
policy: str = "force",
):
"""Installs data models, listed in the dependencies, in the osw.model.entity
module.
Parameters
----------
dependencies
A dictionary with the keys being the names of the dependencies and the
values being the full page name (IRI) of the dependencies.
mode
The mode to use when loading the dependencies. Default is 'append',
which will keep existing data models and only load the missing ones. The
mode 'replace' will replace all existing data models with the new ones.
policy
The policy to use when loading the dependencies. Default is 'force',
which will always load the dependencies. If policy is 'if-missing',
dependencies will only be loaded if they are not already installed.
This may lead to outdated dependencies, if the dependencies have been
updated on the server. If policy is 'if-outdated', dependencies will only
be loaded if they were updated on the server. (not implemented yet)
"""
if dependencies is None:
if default_params.dependencies is None:
raise ValueError(
"No 'dependencies' parameter was passed to "
"install_dependencies() and "
"osw.defaults.params.dependencies was not set!"
)
dependencies = default_params.dependencies
schema_fpts = []
for k, v in dependencies.items():
if policy != "if-missing" or not hasattr(model, k):
schema_fpts.append(v)
if policy == "if-outdated":
raise NotImplementedError(
"The policy 'if-outdated' is not implemented yet."
)
schema_fpts = list(set(schema_fpts))
for schema_fpt in schema_fpts:
if not schema_fpt.count(":") == 1:
raise ValueError(
f"Full page title '{schema_fpt}' does not have the correct format. "
"It should be 'Namespace:Name'."
)
self.fetch_schema(OSW.FetchSchemaParam(schema_title=schema_fpts, mode=mode))
@staticmethod
def check_dependencies(dependencies: Dict[str, str]) -> List[str]:
"""Check if the dependencies are installed in the osw.model.entity module.
Parameters
----------
dependencies
A dictionary with the keys being the names of the dependencies and the
values being the full page name (IRI) of the dependencies.
"""
return [dep for dep in dependencies if not hasattr(model, dep)]
def ensure_dependencies(self, dependencies: Dict[str, str]):
"""Ensure that the dependencies are installed in the osw.model.entity module.
Parameters
----------
dependencies
A dictionary with the keys being the names of the dependencies and the
values being the full page name (IRI) of the dependencies.
"""
if self.check_dependencies(dependencies):
self.install_dependencies(dependencies)
class LoadEntityParam(BaseModel):
"""Param for load_entity()"""
titles: Union[str, List[str]]
"""The pages titles to load - one or multiple titles (wiki page name) of
entities"""
autofetch_schema: Optional[bool] = True
"""If true, load the corresponding schemas /
categories ad-hoc if not already present"""
model_to_use: Optional[Type[OswBaseModel]] = None
"""If provided this model will be used to create an entity (instance of the
model), instead of instantiating the autofetched schema."""
remove_empty: Optional[bool] = True
"""If true, remove key with an empty string, list, dict or set as value
from the jsondata."""
disable_cache: bool = False
"""If true, disable the cache for the loading process"""
offline_pages: Optional[Dict[str, WtPage]] = None
"""pages to be used offline instead of fetching them from the OSW instance"""
class Config:
arbitrary_types_allowed = True # allow any class as type
def __init__(self, **data):
super().__init__(**data)
if not isinstance(self.titles, list):
self.titles = [self.titles]
class LoadEntityResult(BaseModel):
"""Result of load_entity()"""
entities: Union[model.OswBaseModel, List[model.OswBaseModel]]
"""The dataclass instance(s)"""
# fmt: off
@overload
def load_entity(self, entity_title: str) -> model.Entity:
...
@overload
def load_entity(self, entity_title: List[str]) -> List[model.Entity]:
...
@overload
def load_entity(self, entity_title: LoadEntityParam) -> LoadEntityResult:
...
# fmt: on
def load_entity(
self, entity_title: Union[str, List[str], LoadEntityParam]
) -> Union[model.Entity, List[model.Entity], LoadEntityResult]:
"""Loads the entity with the given wiki page name from the OSW instance.
Creates an instance of the class specified by the "type" attribute, default
model.Entity. An instance of model.Entity can be cast to any subclass with
.cast(model.<class>) .
Parameters
----------
entity_title
the wiki page name
Returns
-------
the dataclass instance if only a single title is given
a list of dataclass instances if a list of titles is given
a LoadEntityResult instance if a LoadEntityParam is given
"""
if isinstance(entity_title, str):
param = OSW.LoadEntityParam(titles=[entity_title])
elif isinstance(entity_title, list):
param = OSW.LoadEntityParam(titles=entity_title)
else:
param = entity_title
if param.model_to_use:
_logger.info(f"Using schema {param.model_to_use.__name__} to create entity")
# store original cache state
cache_state = self.site.get_cache_enabled()
if param.disable_cache:
self.site.disable_cache()
if not cache_state and param.disable_cache:
# enable cache to speed up loading
self.site.enable_cache()
# the restore runs in a finally block so that an exception from any of the
# calls below cannot leave the cache enabled for the rest of the process
try:
entities = []
pages = self.site.get_page(
WtSite.GetPageParam(
titles=param.titles, offline_pages=param.offline_pages
)
).pages
for page in pages:
entity = None
schemas = []
schemas_fetched = True
jsondata = page.get_slot_content("jsondata")
if param.remove_empty:
remove_empty(jsondata)
if jsondata:
for category in jsondata["type"]:
schema = (
self.site
.get_page(
WtSite.GetPageParam(
titles=[category], offline_pages=param.offline_pages
)
)
.pages[0]
.get_slot_content("jsonschema")
)
schemas.append(schema)
# generate model if not already exists
cls_name: str = schema["title"]
# If a schema_to_use is provided, we do not need to check if
# the model exists
if not param.model_to_use:
if not hasattr(model, cls_name):
if param.autofetch_schema:
self.fetch_schema(
OSW.FetchSchemaParam(
schema_title=category,
mode="append",
offline_pages=param.offline_pages,
)
)
if not hasattr(model, cls_name):
schemas_fetched = False
_logger.error(
f"Model {cls_name} not found. Schema {category} "
f"needs to be fetched first."
)
if not schemas_fetched:
continue
try:
if param.model_to_use:
entity: model.OswBaseModel = param.model_to_use(**jsondata)
elif len(schemas) == 0:
_logger.error("no schema defined")
elif len(schemas) == 1:
cls: Type[model.Entity] = getattr(model, schemas[0]["title"])
entity: model.Entity = cls(**jsondata)
else:
bases = []
for schema in schemas:
bases.append(getattr(model, schema["title"]))
cls = create_model("Test", __base__=tuple(bases))
entity: model.Entity = cls(**jsondata)
except Exception as e:
_logger.error(f"Error creating entity from page {page.title}: {e}")
# legacy: `entity` is annotated as OswBaseModel and Entity above
entity = None # ty: ignore[conflicting-declarations]
if entity is not None:
# make sure we do not override existing metadata
if not hasattr(entity, "meta") or entity.meta is None:
entity.meta = model.Meta()
if (
not hasattr(entity.meta, "wiki_page")
or entity.meta.wiki_page is None
):
entity.meta.wiki_page = model.WikiPage()
entity.meta.wiki_page.namespace = namespace_from_full_title(
page.title
)
entity.meta.wiki_page.title = title_from_full_title(page.title)
entities.append(entity)
finally:
# restore original cache state
if cache_state:
self.site.enable_cache()
else:
self.site.disable_cache()
if isinstance(entity_title, str): # single title
if len(entities) >= 1:
return entities[0]
else:
return None
if isinstance(entity_title, list): # list of titles
return entities
if isinstance(entity_title, OSW.LoadEntityParam): # LoadEntityParam
return OSW.LoadEntityResult(entities=entities)
class OverwriteClassParam(OswBaseModel):
model: Type[OswBaseModel] # ModelMetaclass
"""The model class for which this is the overwrite params object."""
overwrite: Optional[OVERWRITE_CLASS_OPTIONS] = False
"""Defines the overall overwriting behavior. Used for any property if the
property specific setting is not set."""
per_property: Optional[Dict[str, OverwriteOptions]] = None
"""A key (property name) - value (overwrite setting) pair."""
_per_property: Dict[str, OVERWRITE_CLASS_OPTIONS] = PrivateAttr()
"""Private property, for internal use only. Use 'per_property' instead"""
@validator("per_property")
def validate_per_property(cls, per_property, values):
if per_property is None: # nothing to check, the fallback applies
return per_property
model_ = values.get("model")
if model_ is None:
# 'model' itself did not validate; without it the property names
# below cannot be checked at all
raise ValueError("'model' is required to validate 'per_property'")
field_names = list(model_.__fields__.keys())
keys = per_property.keys()
if not all(key in field_names for key in keys):
missing_keys = [key for key in keys if key not in field_names]
raise ValueError(
f"Property not found in model: {', '.join(missing_keys)}"
)
return per_property
@classmethod
def _normalize_overwrite(cls, value):
"""Replace the two non-policy values by the default setting.
Neither ``None`` nor the ``none`` sentinel is a policy:
``get_overwrite_setting()`` would hand them to the merge, where they
match no branch and silently behave like 'false'.
"""
if value is None or value is AddOverwriteClassOptions.none:
return cls.__fields__["overwrite"].get_default()
return value
def __setattr__(self, key, value):
"""Called when setting an attribute"""
if key == "overwrite":
value = self._normalize_overwrite(value)
# the effective settings are derived from these three, so any of them
# changing has to rebuild them
if key not in ("model", "overwrite", "per_property"):
super().__setattr__(key, value)
return
previous = getattr(self, key)
super().__setattr__(key, value)
try:
self._sync_per_property()
except ValueError:
# _sync_per_property() rejects before it touches _per_property,
# so restoring the field is enough to undo the assignment. Leaving
# a rejected value in place would let it take effect later, on the
# next assignment that happens to be accepted.
super().__setattr__(key, previous)
raise
def __init__(self, **data):
"""Called after validation. Sets the fallback for every property that
has not been specified in per_property."""
super().__init__(**data)
# routed through __setattr__, which normalizes and rebuilds
self.overwrite = self.overwrite
# todo: from class definition get properties with hidden /
# read_only option # those can be safely overwritten - set the to True
def _sync_per_property(self) -> None:
"""Rebuild the effective overwrite setting of every model field."""
if self.per_property and isinstance(
self.overwrite, AddOverwriteClassOptions
):
# _apply_overwrite_policy() short-circuits on 'replace remote'
# and 'keep existing' before it looks at a single property, so
# this combination would discard 'per_property' silently. Check
# it here rather than in a validator so that it also holds when
# either field is reassigned after construction.
raise ValueError(
f"'per_property' cannot be combined with overwrite="
f"'{self.overwrite.value}', which acts on the entity as a "
f"whole. Use an OverwriteOptions value for 'overwrite'."
)
per_property_ = self.per_property or {}
self._per_property = {
field_name: per_property_.get(field_name, self.overwrite)
for field_name in self.model.__fields__.keys()
}
def get_overwrite_setting(self, property_name: str) -> OverwriteOptions:
"""Returns the fallback overwrite option for the given field name"""
return self._per_property.get(property_name, self.overwrite)
class _ApplyOverwriteParam(OswBaseModel):
page: WtPage
entity: OswBaseModel # actually model.Entity but this causes the "type" error
policy: Union[OSW.OverwriteClassParam, OVERWRITE_CLASS_OPTIONS]
namespace: Optional[str]
remove_empty: Optional[bool] = True
inplace: Optional[bool] = False
debug: Optional[bool] = False
offline: Optional[bool] = False
class Config:
arbitrary_types_allowed = True
@validator("entity")
def validate_entity(cls, entity, values):
"""Make sure that the passed entity has the same uuid as the page"""
page: WtPage = values.get("page")
if not page.exists: # Guard clause
return entity
jsondata = page.get_slot_content("jsondata")
if jsondata is None: # Guard clause
title = title_from_full_title(page.title)
try:
uuid_from_title = get_uuid_from_osw_id(title)
except ValueError:
_logger.error(
f"UUID could not be determined from title: '{title}', "
f"nor fromjsondata: {jsondata}"
)
return entity
if str(uuid_from_title) != str(entity.uuid):
raise ValueError(
f"UUID mismatch: Page UUID: {uuid_from_title}, "
f"Entity UUID: {entity.uuid}"
)
return entity
page_uuid = str(jsondata.get("uuid"))
entity_uuid = str(getattr(entity, "uuid", None))
if page_uuid != entity_uuid or page_uuid == str(None):
# Comparing string type UUIDs
raise ValueError(
f"UUID mismatch: Page UUID: {page_uuid}, Entity UUID: {entity_uuid}"
)
return entity
def __init__(self, **data):
super().__init__(**data)
if self.namespace is None:
self.namespace = get_namespace(self.entity)
if self.namespace is None:
raise ValueError("Namespace could not be determined.")
if not isinstance(self.policy, OSW.OverwriteClassParam):
self.policy = OSW.OverwriteClassParam(
model=self.entity.__class__,
overwrite=self.policy,
)
@staticmethod
def _apply_overwrite_policy(param: OSW._ApplyOverwriteParam) -> WtPage:
if param.inplace:
page = param.page
else:
page = deepcopy(param.page)
entity_title = f"{param.namespace}:{get_title(param.entity)}"
def set_content(content_to_set: dict) -> None:
if param.debug:
_logger.debug(f"content_to_set: {content_to_set!s}")
for slot_ in content_to_set.keys():
page.set_slot_content(slot_, content_to_set[slot_])
# Create a variable to hold the new content
new_content = {
# required for json parsing and header rendering
"header": "{{#invoke:Entity|header}}",
# required for footer rendering
"footer": "{{#invoke:Entity|footer}}",
}
# Take the shortcut if
# 1. page does not exist AND any setting of overwrite
# 2. overwrite is "replace remote"
if (
not page.exists
or param.policy.overwrite == AddOverwriteClassOptions.replace_remote
or param.offline is True
):
# Use pydantic serialization, skip none values:
new_content["jsondata"] = json.loads(param.entity.json(exclude_none=True))
if param.remove_empty:
remove_empty(new_content["jsondata"])
set_content(new_content)
page.changed = True
return page # Guard clause --> exit function
# 3. pages does exist AND overwrite is "keep existing"
if (
page.exists
and param.policy.overwrite == AddOverwriteClassOptions.keep_existing
):
_logger.warning(
f"Entity '{entity_title}' already exists and won't be stored "
f"with overwrite set to 'keep existing'!"
)
return page # Guard clause --> exit function
# Apply the overwrite logic in any other case
# 4. If per_property was None -> overwrite will be used as a fallback
# 4.1 If overwrite is True ---> overwrite existing properties
# 4.2 If overwrite is False --> don't overwrite existing properties
# 4.3 If overwrite is "only empty" --> overwrite existing properties if
# they are empty
# * Download page
# * Merge slots selectively based on per_property
# Create variables to hold local and remote content prior to merging
local_content = {}
remote_content = {}
# Get the remote content
for slot in ["jsondata", "header", "footer"]: # SLOTS:
remote_content[slot] = page.get_slot_content(slot)
# Todo: remote content does not contain properties that are not set
if param.remove_empty:
remove_empty(remote_content["jsondata"])
if remote_content["header"]: # not None or {} or ""
new_content["header"] = remote_content["header"]
if remote_content["footer"]:
new_content["footer"] = remote_content["footer"]
if param.debug:
_logger.debug(f"'remote_content': {remote_content!s}")
# Get the local content
# Properties that are not set in the local content will be set to None
# We want those not to be listed as keys
local_content["jsondata"] = json.loads(param.entity.json(exclude_none=True))
if param.remove_empty:
remove_empty(local_content["jsondata"])
if param.debug:
_logger.debug(f"'local_content': {local_content!s}")
# Apply the overwrite logic
# a) If there is a key in the remote content that is not in the local
# content, we have to keep it
if remote_content["jsondata"] is None:
remote_content["jsondata"] = {}
new_content["jsondata"] = remote_content["jsondata"]
# new_content["jsondata"] = {
# key: value
# for (key, value) in remote_content["jsondata"].items()
# if key not in local_content["jsondata"].keys()
# }
if param.debug:
_logger.debug(f"'New content' after 'remote' update: {new_content!s}")
# b) If there is a key in the local content that is not in the remote
# content, we have to keep it
new_content["jsondata"].update({
key: value
for (key, value) in local_content["jsondata"].items()
if key not in remote_content["jsondata"].keys()
})
if param.debug:
_logger.debug(f"'New content' after 'local' update: {new_content!s}")
# c) If there is a key in both contents, we have to apply the overwrite
# logic
# todo: include logic for hidden and read_only properties!
new_content["jsondata"].update({
key: value
for (key, value) in local_content["jsondata"].items()
if param.policy.get_overwrite_setting(key) == OverwriteOptions.true
})
if param.debug:
_logger.debug(f"'New content' after 'True' update: {new_content!s}")
new_content["jsondata"].update({
key: value
for (key, value) in remote_content["jsondata"].items()
if param.policy.get_overwrite_setting(key) == OverwriteOptions.false
})
if param.debug:
_logger.debug(f"'New content' after 'False' update: {new_content!s}")
new_content["jsondata"].update({
key: value
for (key, value) in local_content["jsondata"].items()
if (
param.policy.get_overwrite_setting(key) == OverwriteOptions.only_empty
and is_empty(remote_content["jsondata"].get(key))
)
})
if param.debug:
_logger.debug(f"'New content' after 'only empty' update: {new_content!s}")
_logger.debug(f"'New content' to be stored: {new_content!s}")
set_content(new_content)
return page # Guard clause --> exit function
class StoreEntityParam(OswBaseModel):
entities: Union[OswBaseModel, List[OswBaseModel]] # actually model.Entity
"""The entities to store. Can be a single entity or a list of entities."""
namespace: Optional[str]
"""The namespace of the entities. If not set, the namespace is derived from the
entity."""
parallel: Optional[bool] = None
"""If set to True, the entities are stored in parallel."""
overwrite: Optional[OVERWRITE_CLASS_OPTIONS] = "keep existing"
"""If no class specific overwrite setting is set, this setting is used."""
overwrite_per_class: Optional[List[OSW.OverwriteClassParam]] = None
"""A list of OverwriteClassParam objects. If a class specific overwrite setting
is set, this setting is used.
"""
remove_empty: Optional[bool] = True
"""If true, remove key with an empty string value from the jsondata."""
change_id: Optional[str] = None
"""ID to document the change. Entities within the same store_entity() call will
share the same change_id. This parameter can also be used to link multiple
store_entity() calls."""
bot_edit: Optional[bool] = True
"""Mark the edit as bot edit,
which hides the edit from the recent changes in the default filer"""
edit_comment: Optional[str] = None
"""Additional comment to explain the edit."""
meta_category_title: Optional[Union[str, List[str]]] = "Category:Category"
debug: Optional[bool] = False
offline: Optional[bool] = False
"""If set to True, the processed entities are not upload but only returned as WtPages.
Can be used to create WtPage objects from entities without uploading them."""
verify_write: Optional[bool] = True
"""If set to True, the existence of every edited page is queried after the
upload. A page that does not exist afterwards is reported in
StoreEntityResult.failed instead of StoreEntityResult.pages. This costs one
additional API request per 50 edited pages, and one further request some
seconds later if a page is reported as missing. If the query itself fails,
the pages are reported as stored and an error is logged. Has no effect if
'offline' is True."""
_overwrite_per_class: Dict[str, Dict[str, OSW.OverwriteClassParam]] = (
PrivateAttr()
)
"""Private attribute, for internal use only. Use 'overwrite_per_class'
instead."""
def __init__(self, **data):
super().__init__(**data)
if not isinstance(self.entities, list):
self.entities = [self.entities]
if self.change_id is None:
self.change_id = str(uuid4())
for entity in self.entities:
if getattr(entity, "meta", None) is None:
entity.meta = model.Meta()
if entity.meta.change_id is None:
entity.meta.change_id = []
if self.change_id not in entity.meta.change_id:
entity.meta.change_id.append(self.change_id)
if len(self.entities) > 5 and self.parallel is None:
self.parallel = True
if self.parallel is None:
self.parallel = (
True # Set to True after implementation of asynchronous upload
)
if self.overwrite is None:
self.overwrite = self.__fields__["overwrite"].get_default()
self._overwrite_per_class = {"by name": {}, "by type": {}}
if self.overwrite_per_class is not None:
for param in self.overwrite_per_class:
model_name = param.model.__name__
model_type = param.model.__fields__["type"].get_default()[0]
if (
model_name in self._overwrite_per_class["by name"].keys()
or model_type in self._overwrite_per_class["by type"].keys()
):
raise ValueError(
f"More than one OverwriteClassParam for the class "
f"'{model_type}' ({model_name}) has been passed in the "
f"list to 'overwrite_per_class'!"
)
self._overwrite_per_class["by name"][model_name] = param
self._overwrite_per_class["by type"][model_type] = param
class StoreEntityResult(OswBaseModel):
"""Result of store_entity()"""
change_id: str
"""The ID of the change"""
pages: Dict[str, WtPage]
"""The pages that have been successfully stored, keyed by full page title.
On partial failure this contains only the successfully-stored pages."""
failed: Dict[str, Exception] = {}
"""Entities that could not be stored, mapped to the exception that caused the
failure. Empty on full success. The key is the full page title where one could
be determined. For an entity whose title or namespace could not be resolved it
falls back to the entity name, then to its uuid, then to 'unknown', so do not
parse this key as 'namespace:title'."""
class Config:
arbitrary_types_allowed = True
class StoreEntityPartialError(Exception):
"""Raised by store_entity() when one or more entities could not be stored.
Carries the partial ``StoreEntityResult`` so callers can learn exactly which
entities were written (``stored`` / ``result.pages``) and which failed
(``failed`` / ``result.failed``) without a separate existence query.
"""
def __init__(self, result: OSW.StoreEntityResult):
self.result = result
self.stored = list(result.pages.keys())
self.failed = result.failed
total = len(result.pages) + len(result.failed)
failed_titles = ", ".join(result.failed.keys())
super().__init__(
f"store_entity failed for {len(result.failed)} of {total} "
f"entities: {failed_titles}"
)
class PageNotCreatedError(Exception):
"""Raised for a page that does not exist after store_entity() edited it.
The edit was sent and no exception was raised, but the page is absent when
the wiki is asked afterwards. A form or template driven creation step on
the category can reject the content server-side without reporting an error
to the API client.
"""
def __init__(self, title: str):
self.title = title
super().__init__(
f"Page '{title}' does not exist after the edit. The write was "
f"rejected by the wiki without an error response."
)
def _get_missing_page_titles(
self, titles: List[str], confirm_delay_s: int = 5
) -> List[str]:
"""Returns those of the given page titles that do not exist on the wiki.
A title the wiki reports as missing is queried a second time after
confirm_delay_s seconds. A read can be answered by a database replica that
does not have the write yet, and a title that is still absent seconds later
is not explained by that lag.
Parameters
----------
titles:
Full page titles to check.
confirm_delay_s:
Seconds to wait before the second query. Set to 0 to query only once.
"""
missing = self._query_missing_page_titles(titles)
if missing and confirm_delay_s:
sleep(confirm_delay_s)
missing = self._query_missing_page_titles(missing)
return missing
def _query_missing_page_titles(self, titles: List[str]) -> List[str]:
"""Asks the wiki once which of the given page titles do not exist.
The query goes to the MediaWiki API directly and not through
WtSite.get_page(), because the page cache would answer with the state from
before the write.
Parameters
----------
titles:
Full page titles to check.
"""
missing = []
batch_size = 50 # maximum number of titles per API query
for start in range(0, len(titles), batch_size):
batch = titles[start : start + batch_size]
result = self.mw_site.api(
"query", titles="|".join(batch), prop="info", format="json"
)
query = result.get("query", {})
# the API normalizes titles, map them back to what was requested
normalized = {n["to"]: n["from"] for n in query.get("normalized", [])}
for page_info in query.get("pages", {}).values():
if "missing" in page_info:
title = page_info.get("title")
missing.append(normalized.get(title, title))
return missing
def store_entity(
self, param: Union[StoreEntityParam, OswBaseModel, List[OswBaseModel]]
) -> StoreEntityResult:
"""stores the given dataclass instance as OSW page by calling BaseModel.json()
Parameters
----------
param:
StoreEntityParam, the dataclass instance or a list of instances
"""
if isinstance(param, list):
param = OSW.StoreEntityParam(entities=param)
elif not isinstance(param, OSW.StoreEntityParam):
# Accept any OswBaseModel / Entity / Controller instance
param = OSW.StoreEntityParam(entities=[param])
if not isinstance(param.entities, list):
param.entities = [param.entities]
param: OSW.StoreEntityParam = param
max_index = len(param.entities)
created_pages = {}
edited_titles = set()
"""Titles of the pages an edit was sent for, to be verified below."""
meta_category_templates = {}
if param.namespace == "Category":
meta_category_titles = param.meta_category_title
if not isinstance(meta_category_titles, list):
meta_category_titles = [meta_category_titles]
meta_category_template_strs = {}
# We have to do this iteratively to support meta categories inheritance
while meta_category_titles is not None and len(meta_category_titles) > 0:
meta_categories = self.site.get_page(
WtSite.GetPageParam(titles=meta_category_titles)
).pages
for meta_category in meta_categories:
meta_category_template_strs[meta_category.title] = (
meta_category.get_slot_content("schema_template")
)
meta_category_titles = meta_category.get_slot_content("jsondata").get(
"subclass_of"
)
for title in meta_category_template_strs.keys():
meta_category_template_str = meta_category_template_strs[title]
if meta_category_template_str:
meta_category_templates[title] = compile_handlebars_template(
meta_category_template_str
)
# inverse order to have the most generic template first
meta_category_templates = dict(reversed(meta_category_templates.items()))
def store_entity_(
entity_: model.Entity,
namespace_: str = None,
index: int = None,
overwrite_class_param: OSW.OverwriteClassParam = None,
) -> None:
try:
title_ = get_title(entity_)
except Exception as e:
entity_name = getattr(entity_, "name", None) or getattr(
entity_, "uuid", "unknown"
)
# raise instead of returning: a plain return is not an exception,
# so the collector loop below would record the entity in neither
# created_pages nor failed and store_entity would report success
raise ValueError(
f"Error getting title for entity '{entity_name}': {e}"
) from e
if namespace_ is None:
namespace_ = get_namespace(entity_)
if namespace_ is None or title_ is None:
entity_name = getattr(entity_, "name", None) or getattr(
entity_, "uuid", "unknown"
)
raise TypeError(
f"Unsupported entity type: namespace={namespace_}, "
f"title={title_}, entity name='{entity_name}', "
f"type={type(entity_).__name__}"
)
if overwrite_class_param is None:
raise TypeError("'overwrite_class_param' must not be None!")
entity_title = namespace_ + ":" + title_
page = self._apply_overwrite_policy(
OSW._ApplyOverwriteParam(
page=WtPage(
wtSite=self.site, title=entity_title, do_init=not param.offline
),
entity=entity_,
namespace=namespace_,
policy=overwrite_class_param,
remove_empty=param.remove_empty,
debug=param.debug,
offline=param.offline,
)
)
# _apply_overwrite_policy() returned the remote page untouched. The
# schema regeneration below writes the jsonschema slot regardless of
# the policy, which would edit a page the caller asked to keep.
kept_existing = (
page.exists
# mirrors the branch order of _apply_overwrite_policy(), which
# tests 'offline is True' before it tests 'keep existing'
and param.offline is not True
and overwrite_class_param.overwrite
== AddOverwriteClassOptions.keep_existing
)
if not kept_existing and len(meta_category_templates.keys()) > 0:
generated_schemas = {}
try:
jsondata = page.get_slot_content("jsondata")
if param.remove_empty:
remove_empty(jsondata)
for key in meta_category_templates:
meta_category_template = meta_category_templates[key]
schema_str = eval_compiled_handlebars_template(
meta_category_template,
escape_json_strings(jsondata),
{
"_page_title": entity_title, # Legacy
"_current_subject_": entity_title,
},
)
generated_schemas[key] = json.loads(schema_str)
except Exception as e:
_logger.error(
f"Schema generation from template failed for {entity_}: {e}"
)
mode = AggregateGeneratedSchemasParamMode.ROOT_LEVEL
# Put generated schema in definitions section,
# currently only enabled for Characteristics
if hasattr(model, "CharacteristicType") and isinstance(
entity_, model.CharacteristicType
):
mode = AggregateGeneratedSchemasParamMode.DEFINITIONS_SECTION
new_schema = aggregate_generated_schemas(
AggregateGeneratedSchemasParam(
schema=page.get_slot_content("jsonschema"),
generated_schemas=generated_schemas,
mode=mode,
)
).aggregated_schema
page.set_slot_content("jsonschema", new_schema)
if param.offline is False and not kept_existing:
page.edit(
param.edit_comment, bot_edit=param.bot_edit
) # will set page.changed if the content of the page has changed
edited_titles.add(page.title)
if not param.offline and page.changed:
if index is None:
_logger.info(f"Entity stored at '{page.get_url()}'.")
else:
_logger.info(
f"({index + 1}/{max_index}) Entity stored at "
f"'{page.get_url()}'."
)
created_pages[page.title] = page
sorted_entities = OSW.sort_list_of_entities_by_class(param.entities)
_logger.info(
"Entities to be uploaded have been sorted according to their type.\n"
"If you would like to overwrite existing entities or properties, "
"pass a StoreEntityParam to store_entity() with "
"attribute 'overwrite' or 'overwrite_per_class' set to, e.g., "
"True."
)
class UploadObject(BaseModel):
entity: OswBaseModel
# Actually model.Entity but this causes the "type" error
namespace: Optional[str]
index: int
overwrite_class_param: OSW.OverwriteClassParam
upload_object_list: List[UploadObject] = []
upload_index = 0
for class_type, entities in sorted_entities.by_type.items():
# Try to get a class specific overwrite setting
class_param = param._overwrite_per_class["by type"].get(class_type, None)
if class_param is None:
entity_model = entities[0].__class__
class_param = OSW.OverwriteClassParam(
model=entity_model,
overwrite=param.overwrite,
)
if param.debug:
_logger.debug(
f"Now adding entities of class type '{class_type}' "
f"({entity_model.__name__}) to upload list. No class specific"
f" overwrite setting found. Using fallback option '"
f"{param.overwrite}' for all entities of this class."
)
for entity in entities:
upload_object_list.append(
UploadObject(
entity=entity,
namespace=param.namespace,
index=upload_index,
overwrite_class_param=class_param,
)
)
upload_index += 1
def handle_upload_object_(upload_object: UploadObject) -> None:
# Let exceptions propagate: the caller collects them per entity below,
# so a single failure neither aborts the batch nor is silently
# swallowed. store_entity_ records a page in created_pages whenever it
# reaches its last statement, which only means that nothing raised.
# Whether the page exists afterwards is checked by the verification
# step below.
store_entity_(
upload_object.entity,
upload_object.namespace,
upload_object.index,
upload_object.overwrite_class_param,
)
def failure_title_(upload_object: UploadObject) -> str:
"""Best-effort full page title of a failed entity, for error reporting."""
try:
namespace = upload_object.namespace or get_namespace(
upload_object.entity
)
return f"{namespace}:{get_title(upload_object.entity)}"
except Exception:
return (
getattr(upload_object.entity, "name", None)
or getattr(upload_object.entity, "uuid", None)
or "unknown"
)
if param.parallel:
# return_exceptions=True keeps results aligned with upload_object_list
# and lets every entity be attempted even if some fail.
results = parallelize(
handle_upload_object_,
upload_object_list,
flush_at_end=param.debug,
return_exceptions=True,
)
else:
results = []
for upload_object in upload_object_list:
try:
handle_upload_object_(upload_object)
results.append(None)
except Exception as e:
results.append(e)
failed: Dict[str, Exception] = {}
for upload_object, result in zip(upload_object_list, results):
if isinstance(result, Exception):
title = failure_title_(upload_object)
_logger.error(f"Error storing entity '{title}': {result}")
failed[title] = result
if param.verify_write and not param.offline and edited_titles:
# An edit that raised no exception is not proof that the page exists:
# a form or template driven creation step can reject the content
# server-side. page.changed is no help either, it is True in that case.
titles_to_verify = [
title for title in edited_titles if title in created_pages
]
try:
missing_titles = self._get_missing_page_titles(titles_to_verify)
except Exception as e:
# A failed query is no evidence that the writes failed. Report it
# and keep the pages, instead of discarding everything this call
# has collected so far.
missing_titles = []
_logger.error(
f"Could not verify {len(titles_to_verify)} stored pages, they "
f"are reported as stored without being checked: {e}"
)
for title in missing_titles:
error = OSW.PageNotCreatedError(title)
_logger.error(f"Error storing entity '{title}': {error}")
failed[title] = error
del created_pages[title]
store_result = OSW.StoreEntityResult(
change_id=param.change_id, pages=created_pages, failed=failed
)
if failed:
# Surface partial/total failure so callers cannot mistake a dropped
# page for a success. The result (successes + failures) rides along.
raise OSW.StoreEntityPartialError(store_result)
return store_result
class DeleteEntityParam(OswBaseModel):
entities: Union[OswBaseModel, List[OswBaseModel]]
comment: Optional[str] = None
parallel: Optional[bool] = None
debug: Optional[bool] = False
def __init__(self, **data):
super().__init__(**data)
if not isinstance(self.entities, list):
self.entities = [self.entities]
if len(self.entities) > 5 and self.parallel is None:
self.parallel = True
if self.parallel is None:
self.parallel = False
def delete_entity(
self,
entity: Union[OswBaseModel, List[OswBaseModel], DeleteEntityParam],
comment: str = None,
):
"""Deletes the given entity/entities from the OSW instance."""
if not isinstance(entity, OSW.DeleteEntityParam):
entity = OSW.DeleteEntityParam(entities=entity)
if comment is not None:
entity.comment = comment
def delete_entity_(entity_, comment_: str = None):
"""Deletes the given entity from the OSW instance.
Parameters
----------
entity_:
The dataclass instance to delete
comment_:
Command for the change log, by default None
"""
title_ = None
namespace_ = None
if hasattr(entity_, "meta"):
if entity_.meta and entity_.meta.wiki_page:
if entity_.meta.wiki_page.title:
title_ = entity_.meta.wiki_page.title
if entity_.meta.wiki_page.namespace:
namespace_ = entity_.meta.wiki_page.namespace
if namespace_ is None:
namespace_ = get_namespace(entity_)
if title_ is None:
title_ = OSW.get_osw_id(entity_.uuid)
if namespace_ is None or title_ is None:
_logger.error("Unsupported entity type")
return
entity_title = namespace_ + ":" + title_
page = self.site.get_page(WtSite.GetPageParam(titles=[entity_title])).pages[
0
]
if page.exists:
page.delete(comment_)
_logger.info("Entity deleted: " + page.get_url())
else:
_logger.warning(f"Entity '{entity_title}' does not exist!")
if entity.parallel:
_ = parallelize(
delete_entity_,
entity.entities,
flush_at_end=entity.debug,
comment_=entity.comment,
)
else:
_ = [delete_entity_(e, entity.comment) for e in entity.entities]
class QueryInstancesParam(OswBaseModel):
categories: Union[
Union[str, Type[OswBaseModel]], List[Union[str, Type[OswBaseModel]]]
]
parallel: Optional[bool] = None
debug: Optional[bool] = False
limit: Optional[int] = 1000
_category_string_parts: List[Dict[str, str]] = PrivateAttr()
_titles: List[str] = PrivateAttr()
@staticmethod
def get_full_page_name_parts(
category_: Union[str, Type[OswBaseModel]],
) -> Dict[str, str]:
error_msg = (
f"Category must be a string like 'Category:<category name>' or a "
f"dataclass subclass with a 'type' attribute. This error occurred on "
f"'{category_!s}'"
)
if isinstance(category_, str):
string_to_split = category_
elif issubclass(category_, OswBaseModel):
type_ = category_.__fields__.get("type")
if getattr(type_, "default", None) is None:
raise TypeError(error_msg)
string_to_split = type_.default[0]
else:
raise TypeError(error_msg)
if "Category:" not in string_to_split:
raise TypeError(error_msg)
return {
"namespace": string_to_split.split(":")[0],
"title": string_to_split.split(":")[-1],
}
def __init__(self, **data):
super().__init__(**data)
if not isinstance(self.categories, list):
self.categories = [self.categories]
if len(self.categories) > 5 and self.parallel is None:
self.parallel = True
if self.parallel is None:
self.parallel = False
self._category_string_parts = [
OSW.QueryInstancesParam.get_full_page_name_parts(cat)
for cat in self.categories
]
self._titles = [parts["title"] for parts in self._category_string_parts]
def query_instances(
self, category: Union[str, Type[OswBaseModel], OSW.QueryInstancesParam]
) -> List[str]:
if not isinstance(category, OSW.QueryInstancesParam):
category = OSW.QueryInstancesParam(categories=category)
page_titles = category._titles
search_param = SearchParam(
query=[f"[[HasType::Category:{page_title}]]" for page_title in page_titles],
**category.dict(
exclude={"categories", "_category_string_parts", "_titles"}
),
)
full_page_titles = self.site.semantic_search(search_param)
return full_page_titles
class JsonLdMode(str, Enum):
"""enum for jsonld processing mode"""
expand = "expand"
flatten = "flatten"
compact = "compact"
frame = "frame"
class ExportJsonLdParams(OswBaseModel):
context_loader_config: Optional[WtSite.JsonLdContextLoaderParams] = None
"""The configuration for the JSON-LD context loader."""
entities: Union[OswBaseModel, List[OswBaseModel]]
"""The entities to convert to JSON-LD. Can be a single entity or a list of
entities."""
id_keys: Optional[List[str]] = Field(default=["osw_id"])
"""The keys to use as @id in the JSON-LD output. If not found in the entity at root
level, the full page title is used."""
resolve_context: Optional[bool] = True
"""If True, remote context URLs are resolved."""
mode: Optional[OSW.JsonLdMode] = "expand"
"""The JSON-LD processing mode to apply if resolve_context is True."""
context: Optional[Union[str, list, Dict[str, Any]]] = None
"""The JSON-LD context to apply. Replaces any existing context."""
additional_context: Optional[Union[str, list, Dict[str, Any]]] = None
"""The JSON-LD context to apply on top of the existing context."""
frame: Optional[Dict[str, Any]] = None
"""The JSON-LD frame to use for framed mode. If not set, the existing context is used"""
build_rdf_graph: Optional[bool] = False
"""If True, the output is a graph."""
debug: Optional[bool] = False
"""If True, debug information is printed."""
class Config:
arbitrary_types_allowed = True
def __init__(self, **data):
super().__init__(**data)
if not isinstance(self.entities, list):
self.entities = [self.entities]
class ExportJsonLdResult(OswBaseModel):
documents: List[Union[Dict[str, Any]]]
"""A single JSON-LD document per entity"""
graph_document: Dict[str, Any] = None
"""A single JSON-LD document with a @graph element containing all entities"""
graph: rdflib.Graph = None
"""RDF graph containing all entities. Build only if build_rdf_graph is True"""
class Config:
arbitrary_types_allowed = True
def export_jsonld(self, params: ExportJsonLdParams) -> ExportJsonLdResult:
"""Exports the given entity/entities as JSON-LD."""
if params.resolve_context:
jsonld.set_document_loader(
self.site.get_jsonld_context_loader(params.context_loader_config)
)
documents = []
graph_document = {"@graph": []}
graph = None
if params.build_rdf_graph:
graph = rdflib.Graph()
prefixes = self.site.get_prefix_dict()
for prefix in prefixes:
graph.bind(prefix, prefixes[prefix])
for e in params.entities:
data = json.loads(e.json(exclude_none=True, indent=4, ensure_ascii=False))
data["@context"] = []
if params.id_keys is not None:
# append "@id" mappings to the context in an additional object
id_mapping = {}
for k in params.id_keys:
id_mapping[k] = "@id"
data["@context"].append(id_mapping)
if params.context is None:
for t in e.type:
data["@context"].append("/wiki/" + t)
if params.context is not None:
data["@context"].append(params.context)
else:
data["@context"].append(self.site.get_jsonld_context_prefixes())
if isinstance(params.context, list):
data["@context"].extend(params.context)
else:
data["@context"].append(params.context)
if params.additional_context is not None:
if data["@context"] is None:
data["@context"] = []
elif not isinstance(data["@context"], list):
data["@context"] = [data["@context"]]
data["@context"].append(params.additional_context)
# if none of the id_keys is found, use the full title
if not any(k in data for k in params.id_keys):
data["@id"] = get_full_title(e)
if params.resolve_context:
graph_document["@graph"].append(jsonld.expand(data))
if params.mode == "expand":
data = jsonld.expand(data)
if isinstance(data, list) and len(data) > 0:
data = data[0]
elif params.mode == "flatten":
data = jsonld.flatten(data)
elif params.mode == "compact":
# data = jsonld.expand(data)
# if isinstance(data, list): data = data[0]
data = jsonld.compact(
data,
data["@context"] if params.context is None else params.context,
)
elif params.mode == "frame":
data = jsonld.frame(
data,
(
{"@context": data["@context"]}
if params.frame is None
else params.frame
),
)
if params.build_rdf_graph:
graph.parse(data=json.dumps(data), format="json-ld")
documents.append(data)
result = OSW.ExportJsonLdResult(
documents=documents, graph_document=graph_document, graph=graph
)
return result
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